Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69431297 total, 62078 skipped (flags/unmapped)
Fragments: 34825128 total (34502758 tlen-paired, 22364 hash-paired, 4897 singletons, 6631 discordant, 288478 orphans, 6169 too large [>5000 bp], 7252704 duplicates)
Reads: 76607493 total, 54479 skipped (flags/unmapped)
Fragments: 38435171 total (38070812 tlen-paired, 24977 hash-paired, 5119 singletons, 5042 discordant, 329221 orphans, 8506 too large [>5000 bp], 7972691 duplicates)
Reads: 78170848 total, 94539 skipped (flags/unmapped)
Fragments: 39368306 total (38318438 tlen-paired, 24125 hash-paired, 5412 singletons, 203142 discordant, 817189 orphans, 81149 too large [>5000 bp], 8105271 duplicates)
Reads: 70031117 total, 53451 skipped (flags/unmapped)
Fragments: 35133626 total (34795519 tlen-paired, 22196 hash-paired, 4836 singletons, 5771 discordant, 305304 orphans, 10277 too large [>5000 bp], 7277699 duplicates)