Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82264798 total, 65164 skipped (flags/unmapped)
Fragments: 41259162 total (40895993 tlen-paired, 28133 hash-paired, 6676 singletons, 7402 discordant, 320958 orphans, 4472 too large [>5000 bp], 7900081 duplicates)
Reads: 90684629 total, 66462 skipped (flags/unmapped)
Fragments: 45482525 total (45068457 tlen-paired, 30771 hash-paired, 7149 singletons, 7822 discordant, 368326 orphans, 14296 too large [>5000 bp], 8685114 duplicates)
Reads: 89741593 total, 61910 skipped (flags/unmapped)
Fragments: 45015928 total (44609727 tlen-paired, 29850 hash-paired, 7060 singletons, 5502 discordant, 363789 orphans, 9338 too large [>5000 bp], 8659885 duplicates)
Reads: 92936943 total, 111270 skipped (flags/unmapped)
Fragments: 46790429 total (45597216 tlen-paired, 30977 hash-paired, 7454 singletons, 226381 discordant, 928401 orphans, 90335 too large [>5000 bp], 8892873 duplicates)