Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_SPC-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_SPC-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_SPC-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
The index file is older than the data file: 869_SPC-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 46256594 total, 48268 skipped (flags/unmapped)
Fragments: 23243101 total (22933175 tlen-paired, 7756 hash-paired, 3665 singletons, 3986 discordant, 294519 orphans, 10154 too large [>5000 bp], 4105938 duplicates)
Reads: 50719281 total, 39273 skipped (flags/unmapped)
Fragments: 25508606 total (25150858 tlen-paired, 7632 hash-paired, 3980 singletons, 2932 discordant, 343204 orphans, 4990 too large [>5000 bp], 4493579 duplicates)
Reads: 50916965 total, 39070 skipped (flags/unmapped)
Fragments: 25603853 total (25243618 tlen-paired, 7847 hash-paired, 3783 singletons, 4267 discordant, 344338 orphans, 9155 too large [>5000 bp], 4484973 duplicates)
Reads: 52614557 total, 70061 skipped (flags/unmapped)
Fragments: 26642921 total (25495905 tlen-paired, 8964 hash-paired, 4098 singletons, 223326 discordant, 910628 orphans, 86690 too large [>5000 bp], 4588411 duplicates)