Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.baiThe index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TWH-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 46829253 total, 48716 skipped (flags/unmapped)
Fragments: 23530363 total (23224967 tlen-paired, 8226 hash-paired, 3462 singletons, 4547 discordant, 289161 orphans, 6217 too large [>5000 bp], 3975859 duplicates)
Reads: 47307276 total, 38482 skipped (flags/unmapped)
Fragments: 23784632 total (23456166 tlen-paired, 7993 hash-paired, 3501 singletons, 3981 discordant, 312991 orphans, 8011 too large [>5000 bp], 3985212 duplicates)
Reads: 51812120 total, 40912 skipped (flags/unmapped)
Fragments: 26050403 total (25696768 tlen-paired, 9381 hash-paired, 3704 singletons, 3382 discordant, 337168 orphans, 5637 too large [>5000 bp], 4369769 duplicates)
Reads: 53168677 total, 68208 skipped (flags/unmapped)
Fragments: 26899527 total (25806307 tlen-paired, 8330 hash-paired, 3920 singletons, 216669 discordant, 864301 orphans, 84818 too large [>5000 bp], 4436670 duplicates)