Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_WNV-N1-BDNA-1_B2377KTLT3_3.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62811221 total, 55282 skipped (flags/unmapped)
Fragments: 31505957 total (31206989 tlen-paired, 18937 hash-paired, 4648 singletons, 5596 discordant, 269787 orphans, 9230 too large [>5000 bp], 5870681 duplicates)
Reads: 71034402 total, 86993 skipped (flags/unmapped)
Fragments: 35796221 total (34783495 tlen-paired, 20822 hash-paired, 5177 singletons, 193491 discordant, 793236 orphans, 76690 too large [>5000 bp], 6583668 duplicates)
Reads: 69018736 total, 48700 skipped (flags/unmapped)
Fragments: 34633611 total (34296656 tlen-paired, 20640 hash-paired, 5004 singletons, 4073 discordant, 307238 orphans, 7528 too large [>5000 bp], 6481680 duplicates)
Reads: 69027762 total, 51528 skipped (flags/unmapped)
Fragments: 34637325 total (34286718 tlen-paired, 20813 hash-paired, 4989 singletons, 5720 discordant, 319085 orphans, 12829 too large [>5000 bp], 6419836 duplicates)