Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FGH-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 50168406 total, 48834 skipped (flags/unmapped)
Fragments: 25193046 total (24900360 tlen-paired, 11332 hash-paired, 4142 singletons, 4394 discordant, 272818 orphans, 5220 too large [>5000 bp], 4224606 duplicates)
Reads: 55419891 total, 41804 skipped (flags/unmapped)
Fragments: 27843973 total (27508637 tlen-paired, 10251 hash-paired, 4257 singletons, 3390 discordant, 317438 orphans, 5918 too large [>5000 bp], 4654809 duplicates)
Reads: 56057949 total, 40990 skipped (flags/unmapped)
Fragments: 28163166 total (27821463 tlen-paired, 10828 hash-paired, 4373 singletons, 4578 discordant, 321924 orphans, 8462 too large [>5000 bp], 4728700 duplicates)
Reads: 56988249 total, 71724 skipped (flags/unmapped)
Fragments: 28797174 total (27748045 tlen-paired, 10798 hash-paired, 4530 singletons, 203008 discordant, 830793 orphans, 78750 too large [>5000 bp], 4746044 duplicates)