Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_Y7T-N1-BDNA-1_B2377KTLT3_2.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77495983 total, 59065 skipped (flags/unmapped)
Fragments: 38980230 total (38407976 tlen-paired, 10038 hash-paired, 5674 singletons, 6590 discordant, 549952 orphans, 16042 too large [>5000 bp], 8564694 duplicates)
Reads: 76667826 total, 67655 skipped (flags/unmapped)
Fragments: 38548800 total (38023962 tlen-paired, 9277 hash-paired, 5750 singletons, 6418 discordant, 503393 orphans, 5857 too large [>5000 bp], 8501123 duplicates)
Reads: 84731742 total, 60850 skipped (flags/unmapped)
Fragments: 42627692 total (42011493 tlen-paired, 10721 hash-paired, 6287 singletons, 5176 discordant, 594015 orphans, 7905 too large [>5000 bp], 9410629 duplicates)
Reads: 87516328 total, 109294 skipped (flags/unmapped)
Fragments: 44321214 total (42386764 tlen-paired, 10291 hash-paired, 6685 singletons, 390085 discordant, 1527389 orphans, 149340 too large [>5000 bp], 9579068 duplicates)