Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BDK5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BDK5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BDK5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BDK5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83374775 total, 70843 skipped (flags/unmapped)
Fragments: 41879942 total (41385971 tlen-paired, 11575 hash-paired, 6336 singletons, 8340 discordant, 467720 orphans, 9052 too large [>5000 bp], 8887886 duplicates)
Reads: 84081237 total, 61536 skipped (flags/unmapped)
Fragments: 42249077 total (41727886 tlen-paired, 10160 hash-paired, 6212 singletons, 7732 discordant, 497087 orphans, 12423 too large [>5000 bp], 8920686 duplicates)
Reads: 91362469 total, 61905 skipped (flags/unmapped)
Fragments: 45915653 total (45348914 tlen-paired, 10720 hash-paired, 6676 singletons, 6315 discordant, 543028 orphans, 9481 too large [>5000 bp], 9724787 duplicates)
Reads: 94511768 total, 109171 skipped (flags/unmapped)
Fragments: 47760706 total (46015377 tlen-paired, 11088 hash-paired, 7004 singletons, 349516 discordant, 1377721 orphans, 132955 too large [>5000 bp], 9972159 duplicates)