Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BF1C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BF1C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BF1C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BF1C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73526428 total, 64238 skipped (flags/unmapped)
Fragments: 36929581 total (36498802 tlen-paired, 9138 hash-paired, 5431 singletons, 7911 discordant, 408299 orphans, 8379 too large [>5000 bp], 6966814 duplicates)
Reads: 83054008 total, 108672 skipped (flags/unmapped)
Fragments: 41970551 total (40437812 tlen-paired, 10630 hash-paired, 6134 singletons, 297939 discordant, 1218036 orphans, 114202 too large [>5000 bp], 7778977 duplicates)
Reads: 80909843 total, 61558 skipped (flags/unmapped)
Fragments: 40651848 total (40150359 tlen-paired, 11615 hash-paired, 5901 singletons, 8047 discordant, 475926 orphans, 13208 too large [>5000 bp], 7624807 duplicates)
Reads: 80537076 total, 57191 skipped (flags/unmapped)
Fragments: 40469087 total (39977756 tlen-paired, 9809 hash-paired, 5724 singletons, 5605 discordant, 470193 orphans, 8814 too large [>5000 bp], 7622717 duplicates)