Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_W7S-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W7S-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W7S-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W7S-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82544772 total, 71903 skipped (flags/unmapped)
Fragments: 41440967 total (40998059 tlen-paired, 11146 hash-paired, 6755 singletons, 8439 discordant, 416568 orphans, 7129 too large [>5000 bp], 9090077 duplicates)
Reads: 90008466 total, 65302 skipped (flags/unmapped)
Fragments: 45203105 total (44700909 tlen-paired, 12379 hash-paired, 6880 singletons, 6181 discordant, 476756 orphans, 10295 too large [>5000 bp], 9915073 duplicates)
Reads: 90910305 total, 67091 skipped (flags/unmapped)
Fragments: 45653098 total (45132148 tlen-paired, 12495 hash-paired, 7072 singletons, 8775 discordant, 492608 orphans, 18349 too large [>5000 bp], 9952279 duplicates)
Reads: 93451396 total, 115846 skipped (flags/unmapped)
Fragments: 47171266 total (45610471 tlen-paired, 13772 hash-paired, 7386 singletons, 304863 discordant, 1234774 orphans, 117589 too large [>5000 bp], 10168424 duplicates)