Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GG5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GG5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GG5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GG5-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102741983 total, 85239 skipped (flags/unmapped)
Fragments: 51640745 total (50973730 tlen-paired, 10425 hash-paired, 8632 singletons, 10580 discordant, 637378 orphans, 10632 too large [>5000 bp], 13319851 duplicates)
Reads: 104006772 total, 75374 skipped (flags/unmapped)
Fragments: 52292057 total (51590583 tlen-paired, 11957 hash-paired, 8419 singletons, 9243 discordant, 671855 orphans, 13779 too large [>5000 bp], 13435592 duplicates)
Reads: 112610217 total, 78209 skipped (flags/unmapped)
Fragments: 56629870 total (55856175 tlen-paired, 12249 hash-paired, 9050 singletons, 7960 discordant, 744436 orphans, 12877 too large [>5000 bp], 14593663 duplicates)
Reads: 116870582 total, 136714 skipped (flags/unmapped)
Fragments: 59137017 total (56734446 tlen-paired, 12349 hash-paired, 9498 singletons, 483322 discordant, 1897402 orphans, 183367 too large [>5000 bp], 14951551 duplicates)