Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_3PB-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3PB-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3PB-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3PB-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84827029 total, 71676 skipped (flags/unmapped)
Fragments: 42574707 total (42143313 tlen-paired, 15013 hash-paired, 6522 singletons, 8186 discordant, 401673 orphans, 7067 too large [>5000 bp], 9243531 duplicates)
Reads: 93659885 total, 66791 skipped (flags/unmapped)
Fragments: 47014456 total (46515925 tlen-paired, 17080 hash-paired, 6929 singletons, 8393 discordant, 466129 orphans, 18620 too large [>5000 bp], 10156443 duplicates)
Reads: 92624357 total, 63725 skipped (flags/unmapped)
Fragments: 46504125 total (46017691 tlen-paired, 15141 hash-paired, 6814 singletons, 5861 discordant, 458618 orphans, 8907 too large [>5000 bp], 10086295 duplicates)
Reads: 95752941 total, 115660 skipped (flags/unmapped)
Fragments: 48301725 total (46803698 tlen-paired, 16333 hash-paired, 7227 singletons, 290581 discordant, 1183886 orphans, 112472 too large [>5000 bp], 10348514 duplicates)