Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_19H-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_19H-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_19H-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_19H-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99551184 total, 84304 skipped (flags/unmapped)
Fragments: 49973295 total (49441674 tlen-paired, 16437 hash-paired, 7903 singletons, 9976 discordant, 497305 orphans, 12749 too large [>5000 bp], 12159404 duplicates)
Reads: 100298409 total, 72617 skipped (flags/unmapped)
Fragments: 50364562 total (49810256 tlen-paired, 16192 hash-paired, 7917 singletons, 8658 discordant, 521539 orphans, 13062 too large [>5000 bp], 12177850 duplicates)
Reads: 110446914 total, 71412 skipped (flags/unmapped)
Fragments: 55470819 total (54858531 tlen-paired, 17872 hash-paired, 8466 singletons, 7618 discordant, 578332 orphans, 10331 too large [>5000 bp], 13418482 duplicates)
Reads: 112516017 total, 133774 skipped (flags/unmapped)
Fragments: 56775373 total (54941324 tlen-paired, 19347 hash-paired, 8696 singletons, 361805 discordant, 1444201 orphans, 142197 too large [>5000 bp], 13594811 duplicates)