Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1UN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1UN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1UN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1UN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74150885 total, 66847 skipped (flags/unmapped)
Fragments: 37224146 total (36823792 tlen-paired, 11290 hash-paired, 6072 singletons, 6076 discordant, 376916 orphans, 9367 too large [>5000 bp], 7724443 duplicates)
Reads: 74523530 total, 54492 skipped (flags/unmapped)
Fragments: 37429888 total (36993906 tlen-paired, 9281 hash-paired, 5901 singletons, 5845 discordant, 414955 orphans, 15059 too large [>5000 bp], 7711782 duplicates)
Reads: 82157977 total, 55554 skipped (flags/unmapped)
Fragments: 41270003 total (40802211 tlen-paired, 10312 hash-paired, 6497 singletons, 5257 discordant, 445726 orphans, 7320 too large [>5000 bp], 8522487 duplicates)
Reads: 84021425 total, 95963 skipped (flags/unmapped)
Fragments: 42419344 total (40994492 tlen-paired, 12059 hash-paired, 6782 singletons, 285259 discordant, 1120752 orphans, 107154 too large [>5000 bp], 8647858 duplicates)