Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_26C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_26C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_26C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_26C-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai

Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58870368 total, 51703 skipped (flags/unmapped)
Fragments: 29568651 total (29224992 tlen-paired, 7453 hash-paired, 5251 singletons, 5603 discordant, 325352 orphans, 5983 too large [>5000 bp], 5182010 duplicates)
Reads: 64338746 total, 44699 skipped (flags/unmapped)
Fragments: 32331120 total (31938590 tlen-paired, 7993 hash-paired, 5419 singletons, 4172 discordant, 374946 orphans, 6086 too large [>5000 bp], 5645356 duplicates)
Reads: 64924723 total, 45571 skipped (flags/unmapped)
Fragments: 32620695 total (32223148 tlen-paired, 7699 hash-paired, 5453 singletons, 5804 discordant, 378591 orphans, 10903 too large [>5000 bp], 5672874 duplicates)
Reads: 66568752 total, 77959 skipped (flags/unmapped)
Fragments: 33644421 total (32412997 tlen-paired, 7723 hash-paired, 5604 singletons, 239960 discordant, 978137 orphans, 92846 too large [>5000 bp], 5791440 duplicates)