Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BNY-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNY-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNY-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNY-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63816399 total, 59633 skipped (flags/unmapped)
Fragments: 32015722 total (31704258 tlen-paired, 14521 hash-paired, 4684 singletons, 6609 discordant, 285650 orphans, 7828 too large [>5000 bp], 5538649 duplicates)
Reads: 69848821 total, 51055 skipped (flags/unmapped)
Fragments: 35056983 total (34707583 tlen-paired, 14958 hash-paired, 4983 singletons, 4854 discordant, 324605 orphans, 6694 too large [>5000 bp], 6085732 duplicates)
Reads: 70074631 total, 52369 skipped (flags/unmapped)
Fragments: 35167537 total (34808635 tlen-paired, 15797 hash-paired, 5030 singletons, 6837 discordant, 331238 orphans, 11728 too large [>5000 bp], 6052689 duplicates)
Reads: 71718298 total, 89201 skipped (flags/unmapped)
Fragments: 36152260 total (35102501 tlen-paired, 16037 hash-paired, 5217 singletons, 200677 discordant, 827828 orphans, 78811 too large [>5000 bp], 6176466 duplicates)