Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BNMN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNMN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNMN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNMN-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77718347 total, 67619 skipped (flags/unmapped)
Fragments: 38997356 total (38613175 tlen-paired, 15192 hash-paired, 5414 singletons, 7963 discordant, 355612 orphans, 8521 too large [>5000 bp], 7752741 duplicates)
Reads: 85400807 total, 54037 skipped (flags/unmapped)
Fragments: 42873814 total (42437940 tlen-paired, 14834 hash-paired, 5874 singletons, 6046 discordant, 409120 orphans, 7068 too large [>5000 bp], 8494296 duplicates)
Reads: 85509155 total, 57935 skipped (flags/unmapped)
Fragments: 42920575 total (42479062 tlen-paired, 15233 hash-paired, 6114 singletons, 7862 discordant, 412304 orphans, 14244 too large [>5000 bp], 8479187 duplicates)
Reads: 87326009 total, 98793 skipped (flags/unmapped)
Fragments: 44040770 total (42723418 tlen-paired, 15081 hash-paired, 6124 singletons, 252845 discordant, 1043302 orphans, 97551 too large [>5000 bp], 8639889 duplicates)