Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_UCZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_UCZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_UCZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_UCZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72243193 total, 61390 skipped (flags/unmapped)
Fragments: 36301507 total (35849649 tlen-paired, 9339 hash-paired, 6360 singletons, 7042 discordant, 429117 orphans, 7133 too large [>5000 bp], 7592976 duplicates)
Reads: 79412492 total, 57038 skipped (flags/unmapped)
Fragments: 39924893 total (39401016 tlen-paired, 8928 hash-paired, 6735 singletons, 4853 discordant, 503361 orphans, 7882 too large [>5000 bp], 8316312 duplicates)
Reads: 79673099 total, 57141 skipped (flags/unmapped)
Fragments: 40049065 total (39517775 tlen-paired, 8787 hash-paired, 6781 singletons, 7293 discordant, 508429 orphans, 16519 too large [>5000 bp], 8326978 duplicates)
Reads: 82242415 total, 96821 skipped (flags/unmapped)
Fragments: 41610260 total (39954109 tlen-paired, 9036 hash-paired, 7100 singletons, 325889 discordant, 1314126 orphans, 123150 too large [>5000 bp], 8530890 duplicates)