Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_YHI-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_YHI-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_YHI-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YHI-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67800044 total, 61557 skipped (flags/unmapped)
Fragments: 34036922 total (33665430 tlen-paired, 9651 hash-paired, 4832 singletons, 6058 discordant, 350951 orphans, 10213 too large [>5000 bp], 6686926 duplicates)
Reads: 74438242 total, 51523 skipped (flags/unmapped)
Fragments: 37387836 total (36954673 tlen-paired, 10284 hash-paired, 5078 singletons, 6142 discordant, 411659 orphans, 13892 too large [>5000 bp], 7292265 duplicates)
Reads: 74171981 total, 49871 skipped (flags/unmapped)
Fragments: 37259815 total (36831831 tlen-paired, 10372 hash-paired, 5042 singletons, 4298 discordant, 408272 orphans, 7897 too large [>5000 bp], 7309018 duplicates)
Reads: 76111147 total, 92195 skipped (flags/unmapped)
Fragments: 38444039 total (37107616 tlen-paired, 10285 hash-paired, 5433 singletons, 261448 discordant, 1059257 orphans, 97782 too large [>5000 bp], 7412390 duplicates)