Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_3HC-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_3HC-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3HC-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3HC-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99097250 total, 86167 skipped (flags/unmapped)
Fragments: 49698432 total (49256858 tlen-paired, 24917 hash-paired, 8332 singletons, 8850 discordant, 399475 orphans, 11013 too large [>5000 bp], 11217705 duplicates)
Reads: 99648247 total, 74150 skipped (flags/unmapped)
Fragments: 49990449 total (49514755 tlen-paired, 23682 hash-paired, 8271 singletons, 8091 discordant, 435650 orphans, 18560 too large [>5000 bp], 11208756 duplicates)
Reads: 109874922 total, 74149 skipped (flags/unmapped)
Fragments: 55127901 total (54619880 tlen-paired, 25572 hash-paired, 9098 singletons, 6894 discordant, 466457 orphans, 10263 too large [>5000 bp], 12389903 duplicates)
Reads: 111324152 total, 128221 skipped (flags/unmapped)
Fragments: 56065466 total (54596831 tlen-paired, 26932 hash-paired, 9344 singletons, 285892 discordant, 1146467 orphans, 110405 too large [>5000 bp], 12521271 duplicates)