Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_M9U-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_M9U-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_M9U-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_M9U-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57013632 total, 49087 skipped (flags/unmapped)
Fragments: 28669616 total (28272830 tlen-paired, 6080 hash-paired, 4540 singletons, 5683 discordant, 380483 orphans, 5168 too large [>5000 bp], 5050798 duplicates)
Reads: 62844543 total, 43761 skipped (flags/unmapped)
Fragments: 31619695 total (31158679 tlen-paired, 6133 hash-paired, 4829 singletons, 4087 discordant, 445967 orphans, 6094 too large [>5000 bp], 5572530 duplicates)
Reads: 62900984 total, 44855 skipped (flags/unmapped)
Fragments: 31643027 total (31178907 tlen-paired, 5306 hash-paired, 5026 singletons, 5725 discordant, 448063 orphans, 11582 too large [>5000 bp], 5545799 duplicates)
Reads: 64967202 total, 75791 skipped (flags/unmapped)
Fragments: 32926300 total (31448204 tlen-paired, 5947 hash-paired, 5241 singletons, 290862 discordant, 1176046 orphans, 110049 too large [>5000 bp], 5668731 duplicates)