Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ0K-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ0K-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ0K-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQ0K-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89636314 total, 75314 skipped (flags/unmapped)
Fragments: 44954396 total (44557574 tlen-paired, 22314 hash-paired, 6664 singletons, 8936 discordant, 358908 orphans, 8890 too large [>5000 bp], 9492463 duplicates)
Reads: 98142883 total, 67294 skipped (flags/unmapped)
Fragments: 49234485 total (48791303 tlen-paired, 23028 hash-paired, 7085 singletons, 6731 discordant, 406338 orphans, 10021 too large [>5000 bp], 10417453 duplicates)
Reads: 98685023 total, 69443 skipped (flags/unmapped)
Fragments: 49504024 total (49047509 tlen-paired, 24391 hash-paired, 7186 singletons, 9058 discordant, 415880 orphans, 15299 too large [>5000 bp], 10399980 duplicates)
Reads: 100649777 total, 113844 skipped (flags/unmapped)
Fragments: 50689075 total (49383082 tlen-paired, 24173 hash-paired, 7591 singletons, 246619 discordant, 1027610 orphans, 96492 too large [>5000 bp], 10594865 duplicates)