Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_W1O-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_W1O-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W1O-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_W1O-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 54108047 total, 52642 skipped (flags/unmapped)
Fragments: 27183749 total (26847420 tlen-paired, 6748 hash-paired, 4200 singletons, 5318 discordant, 320063 orphans, 6085 too large [>5000 bp], 5380600 duplicates)
Reads: 54570460 total, 43594 skipped (flags/unmapped)
Fragments: 27426612 total (27067706 tlen-paired, 6371 hash-paired, 4157 singletons, 4775 discordant, 343603 orphans, 10701 too large [>5000 bp], 5385042 duplicates)
Reads: 59783989 total, 41275 skipped (flags/unmapped)
Fragments: 30053225 total (29665674 tlen-paired, 5450 hash-paired, 4536 singletons, 4037 discordant, 373528 orphans, 7164 too large [>5000 bp], 5898570 duplicates)
Reads: 61322583 total, 77371 skipped (flags/unmapped)
Fragments: 31006269 total (29806561 tlen-paired, 6538 hash-paired, 4762 singletons, 240542 discordant, 947866 orphans, 92651 too large [>5000 bp], 6004568 duplicates)