Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1UX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_1UX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_1UX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1UX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72408528 total, 68013 skipped (flags/unmapped)
Fragments: 36343345 total (35960385 tlen-paired, 13775 hash-paired, 6586 singletons, 7466 discordant, 355133 orphans, 7772 too large [>5000 bp], 7249940 duplicates)
Reads: 79775566 total, 59907 skipped (flags/unmapped)
Fragments: 40054597 total (39612324 tlen-paired, 14660 hash-paired, 7125 singletons, 7318 discordant, 413170 orphans, 13380 too large [>5000 bp], 7940656 duplicates)
Reads: 81619726 total, 103199 skipped (flags/unmapped)
Fragments: 41183851 total (39864583 tlen-paired, 14941 hash-paired, 7194 singletons, 253154 discordant, 1043979 orphans, 99999 too large [>5000 bp], 8100421 duplicates)
Reads: 79082140 total, 56894 skipped (flags/unmapped)
Fragments: 39711631 total (39280621 tlen-paired, 13634 hash-paired, 6996 singletons, 5124 discordant, 405256 orphans, 7118 too large [>5000 bp], 7917214 duplicates)