Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_344-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_344-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_344-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_344-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75115398 total, 55806 skipped (flags/unmapped)
Fragments: 37749478 total (37265573 tlen-paired, 9948 hash-paired, 5847 singletons, 6425 discordant, 461685 orphans, 14084 too large [>5000 bp], 7238690 duplicates)
Reads: 69572487 total, 61226 skipped (flags/unmapped)
Fragments: 34951983 total (34530199 tlen-paired, 9036 hash-paired, 5367 singletons, 6487 discordant, 400894 orphans, 6778 too large [>5000 bp], 6755064 duplicates)
Reads: 78571728 total, 98589 skipped (flags/unmapped)
Fragments: 39733578 total (38199918 tlen-paired, 9674 hash-paired, 6004 singletons, 300899 discordant, 1217083 orphans, 114535 too large [>5000 bp], 7517050 duplicates)
Reads: 76098850 total, 51585 skipped (flags/unmapped)
Fragments: 38253237 total (37768969 tlen-paired, 8029 hash-paired, 5670 singletons, 4658 discordant, 465911 orphans, 6186 too large [>5000 bp], 7367027 duplicates)