Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1CZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1CZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1CZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1CZ-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62232692 total, 57015 skipped (flags/unmapped)
Fragments: 31274108 total (30874909 tlen-paired, 6401 hash-paired, 4587 singletons, 6299 discordant, 381912 orphans, 6980 too large [>5000 bp], 5682506 duplicates)
Reads: 62760504 total, 49515 skipped (flags/unmapped)
Fragments: 31550985 total (31124928 tlen-paired, 5539 hash-paired, 4472 singletons, 5711 discordant, 410335 orphans, 11913 too large [>5000 bp], 5689220 duplicates)
Reads: 70568376 total, 87276 skipped (flags/unmapped)
Fragments: 35699899 total (34272057 tlen-paired, 6501 hash-paired, 5142 singletons, 284963 discordant, 1131236 orphans, 108840 too large [>5000 bp], 6351727 duplicates)
Reads: 68824041 total, 50286 skipped (flags/unmapped)
Fragments: 34604819 total (34143064 tlen-paired, 6636 hash-paired, 4752 singletons, 4872 discordant, 445495 orphans, 7182 too large [>5000 bp], 6239985 duplicates)