Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_22Q-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_22Q-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_22Q-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_22Q-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67535814 total, 58532 skipped (flags/unmapped)
Fragments: 33875014 total (33567836 tlen-paired, 15316 hash-paired, 4635 singletons, 6866 discordant, 280361 orphans, 6125 too large [>5000 bp], 5892947 duplicates)
Reads: 74492326 total, 53901 skipped (flags/unmapped)
Fragments: 37376256 total (37015468 tlen-paired, 16358 hash-paired, 4947 singletons, 6985 discordant, 332498 orphans, 11679 too large [>5000 bp], 6457717 duplicates)
Reads: 74554232 total, 50438 skipped (flags/unmapped)
Fragments: 37407743 total (37062170 tlen-paired, 15444 hash-paired, 4871 singletons, 4891 discordant, 320367 orphans, 6773 too large [>5000 bp], 6479391 duplicates)
Reads: 75638206 total, 92393 skipped (flags/unmapped)
Fragments: 38103921 total (37078538 tlen-paired, 17363 hash-paired, 5133 singletons, 192965 discordant, 809922 orphans, 76513 too large [>5000 bp], 6545936 duplicates)