Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_G7F-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G7F-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G7F-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G7F-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102698050 total, 70734 skipped (flags/unmapped)
Fragments: 51591471 total (50993780 tlen-paired, 14599 hash-paired, 7816 singletons, 6960 discordant, 568316 orphans, 10253 too large [>5000 bp], 12329732 duplicates)
Reads: 94163470 total, 83676 skipped (flags/unmapped)
Fragments: 47279258 total (46753518 tlen-paired, 15631 hash-paired, 7323 singletons, 9641 discordant, 493145 orphans, 10873 too large [>5000 bp], 11288059 duplicates)
Reads: 106538762 total, 133165 skipped (flags/unmapped)
Fragments: 53804995 total (51946317 tlen-paired, 17921 hash-paired, 8290 singletons, 361926 discordant, 1470541 orphans, 137219 too large [>5000 bp], 12623571 duplicates)
Reads: 103992821 total, 73820 skipped (flags/unmapped)
Fragments: 52232242 total (51623418 tlen-paired, 16379 hash-paired, 7876 singletons, 10138 discordant, 574431 orphans, 18412 too large [>5000 bp], 12395365 duplicates)