Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GWX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GWX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GWX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GWX-N1-BDNA-1_B23H2GYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68183658 total, 54256 skipped (flags/unmapped)
Fragments: 34282856 total (33806377 tlen-paired, 7704 hash-paired, 4921 singletons, 6571 discordant, 457283 orphans, 12947 too large [>5000 bp], 6642631 duplicates)
Reads: 67907380 total, 62693 skipped (flags/unmapped)
Fragments: 34127819 total (33685854 tlen-paired, 7741 hash-paired, 5183 singletons, 7021 discordant, 422020 orphans, 8126 too large [>5000 bp], 6662939 duplicates)
Reads: 75106153 total, 55106 skipped (flags/unmapped)
Fragments: 37768073 total (37254091 tlen-paired, 7654 hash-paired, 5390 singletons, 5313 discordant, 495625 orphans, 7958 too large [>5000 bp], 7311486 duplicates)
Reads: 76961013 total, 98548 skipped (flags/unmapped)
Fragments: 38940420 total (37352395 tlen-paired, 8918 hash-paired, 5763 singletons, 318948 discordant, 1254396 orphans, 120892 too large [>5000 bp], 7435339 duplicates)