Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_TVZ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.baiThe index file is older than the data file: 869_TVZ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_TVZ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TVZ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80062635 total, 81816 skipped (flags/unmapped)
Fragments: 40251803 total (39696593 tlen-paired, 9278 hash-paired, 2653 singletons, 8805 discordant, 534474 orphans, 7170 too large [>5000 bp], 8924021 duplicates)
Reads: 87195130 total, 71264 skipped (flags/unmapped)
Fragments: 43852083 total (43234533 tlen-paired, 10104 hash-paired, 2821 singletons, 6498 discordant, 598127 orphans, 10324 too large [>5000 bp], 9698533 duplicates)
Reads: 88218247 total, 71494 skipped (flags/unmapped)
Fragments: 44363124 total (43739240 tlen-paired, 11543 hash-paired, 2782 singletons, 8852 discordant, 600707 orphans, 11997 too large [>5000 bp], 9773330 duplicates)
Reads: 91241988 total, 179062 skipped (flags/unmapped)
Fragments: 46174369 total (44176666 tlen-paired, 11104 hash-paired, 2898 singletons, 391045 discordant, 1592656 orphans, 154871 too large [>5000 bp], 10019629 duplicates)