Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_TCQ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TCQ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TCQ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TCQ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73620526 total, 74864 skipped (flags/unmapped)
Fragments: 37020904 total (36491622 tlen-paired, 9610 hash-paired, 2489 singletons, 8632 discordant, 508551 orphans, 7447 too large [>5000 bp], 7663417 duplicates)
Reads: 80878399 total, 66236 skipped (flags/unmapped)
Fragments: 40683710 total (40076729 tlen-paired, 9880 hash-paired, 2798 singletons, 8314 discordant, 585989 orphans, 16765 too large [>5000 bp], 8356139 duplicates)
Reads: 83567937 total, 169382 skipped (flags/unmapped)
Fragments: 42314439 total (40406596 tlen-paired, 11882 hash-paired, 2925 singletons, 370024 discordant, 1523012 orphans, 147807 too large [>5000 bp], 8570371 duplicates)
Reads: 80424170 total, 65628 skipped (flags/unmapped)
Fragments: 40457678 total (39866903 tlen-paired, 10319 hash-paired, 2625 singletons, 6110 discordant, 571721 orphans, 8766 too large [>5000 bp], 8343858 duplicates)