Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_HMM-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
The index file is older than the data file: 869_HMM-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HMM-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HMM-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96120019 total, 89154 skipped (flags/unmapped)
Fragments: 48390105 total (47594986 tlen-paired, 11055 hash-paired, 3161 singletons, 9467 discordant, 771436 orphans, 12626 too large [>5000 bp], 10932391 duplicates)
Reads: 96682782 total, 76512 skipped (flags/unmapped)
Fragments: 48698285 total (47867134 tlen-paired, 12784 hash-paired, 3309 singletons, 8387 discordant, 806671 orphans, 9840 too large [>5000 bp], 10946250 duplicates)
Reads: 105886978 total, 76308 skipped (flags/unmapped)
Fragments: 53344528 total (52420711 tlen-paired, 13067 hash-paired, 3384 singletons, 7512 discordant, 899854 orphans, 12426 too large [>5000 bp], 12002341 duplicates)
Reads: 109244432 total, 182406 skipped (flags/unmapped)
Fragments: 55476437 total (52538583 tlen-paired, 13872 hash-paired, 3727 singletons, 585932 discordant, 2334323 orphans, 223601 too large [>5000 bp], 12215807 duplicates)