Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64055560 total, 71599 skipped (flags/unmapped)
Fragments: 32190972 total (31758646 tlen-paired, 9372 hash-paired, 2007 singletons, 6881 discordant, 414066 orphans, 9045 too large [>5000 bp], 5998334 duplicates)
Reads: 69673520 total, 55416 skipped (flags/unmapped)
Fragments: 35033198 total (34557860 tlen-paired, 7712 hash-paired, 2144 singletons, 4802 discordant, 460680 orphans, 7266 too large [>5000 bp], 6509983 duplicates)
Reads: 70367472 total, 58870 skipped (flags/unmapped)
Fragments: 35381326 total (34885066 tlen-paired, 10578 hash-paired, 2129 singletons, 6836 discordant, 476717 orphans, 12398 too large [>5000 bp], 6538868 duplicates)
Reads: 72601047 total, 138462 skipped (flags/unmapped)
Fragments: 36730226 total (35183777 tlen-paired, 8638 hash-paired, 2210 singletons, 301334 discordant, 1234267 orphans, 119305 too large [>5000 bp], 6700780 duplicates)