Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_JVA-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_JVA-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_JVA-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_JVA-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86294639 total, 85004 skipped (flags/unmapped)
Fragments: 43352711 total (42816638 tlen-paired, 12147 hash-paired, 2939 singletons, 9303 discordant, 511684 orphans, 9418 too large [>5000 bp], 8951608 duplicates)
Reads: 93925283 total, 76106 skipped (flags/unmapped)
Fragments: 47202870 total (46606916 tlen-paired, 12450 hash-paired, 3033 singletons, 6803 discordant, 573668 orphans, 10069 too large [>5000 bp], 9724310 duplicates)
Reads: 94594036 total, 76448 skipped (flags/unmapped)
Fragments: 47537627 total (46919209 tlen-paired, 15779 hash-paired, 3135 singletons, 9447 discordant, 590057 orphans, 17763 too large [>5000 bp], 9761805 duplicates)
Reads: 97371068 total, 189241 skipped (flags/unmapped)
Fragments: 49201683 total (47303484 tlen-paired, 14640 hash-paired, 3288 singletons, 366772 discordant, 1513499 orphans, 147624 too large [>5000 bp], 9978721 duplicates)