Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_FDJ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FDJ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FDJ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_FDJ-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87407397 total, 87407 skipped (flags/unmapped)
Fragments: 43944615 total (43332505 tlen-paired, 14562 hash-paired, 2912 singletons, 9562 discordant, 585074 orphans, 9373 too large [>5000 bp], 9169792 duplicates)
Reads: 96126685 total, 75715 skipped (flags/unmapped)
Fragments: 48347815 total (47660513 tlen-paired, 15403 hash-paired, 3146 singletons, 6929 discordant, 661824 orphans, 10155 too large [>5000 bp], 10093858 duplicates)
Reads: 96391481 total, 75414 skipped (flags/unmapped)
Fragments: 48478106 total (47776475 tlen-paired, 15114 hash-paired, 2982 singletons, 9858 discordant, 673677 orphans, 18257 too large [>5000 bp], 10043657 duplicates)
Reads: 99374628 total, 187621 skipped (flags/unmapped)
Fragments: 50305593 total (48104994 tlen-paired, 16586 hash-paired, 3349 singletons, 425654 discordant, 1755010 orphans, 167090 too large [>5000 bp], 10276165 duplicates)