Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_cit-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cit-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.baiThe index file is older than the data file: 659_cit-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.baiThe index file is older than the data file: 659_cit-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai


Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 47933654 total, 51171 skipped (flags/unmapped)
Fragments: 24094854 total (23766574 tlen-paired, 7106 hash-paired, 1534 singletons, 4869 discordant, 314771 orphans, 4540 too large [>5000 bp], 3838438 duplicates)
Reads: 52768928 total, 45488 skipped (flags/unmapped)
Fragments: 26534309 total (26159219 tlen-paired, 7656 hash-paired, 1596 singletons, 4994 discordant, 360844 orphans, 8631 too large [>5000 bp], 4214733 duplicates)
Reads: 52362220 total, 42752 skipped (flags/unmapped)
Fragments: 26332295 total (25965532 tlen-paired, 7749 hash-paired, 1669 singletons, 3614 discordant, 353731 orphans, 5139 too large [>5000 bp], 4196445 duplicates)
Reads: 54397120 total, 107644 skipped (flags/unmapped)
Fragments: 27527391 total (26339415 tlen-paired, 7979 hash-paired, 1717 singletons, 231001 discordant, 947279 orphans, 91845 too large [>5000 bp], 4302129 duplicates)