Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 40781266 total, 42213 skipped (flags/unmapped)
Fragments: 20503472 total (20217117 tlen-paired, 6532 hash-paired, 1355 singletons, 4596 discordant, 273872 orphans, 3668 too large [>5000 bp], 3096031 duplicates)
Reads: 44598820 total, 37914 skipped (flags/unmapped)
Fragments: 22429232 total (22112220 tlen-paired, 6075 hash-paired, 1566 singletons, 3275 discordant, 306096 orphans, 5052 too large [>5000 bp], 3357711 duplicates)
Reads: 44902346 total, 39959 skipped (flags/unmapped)
Fragments: 22581058 total (22255781 tlen-paired, 7227 hash-paired, 1503 singletons, 4393 discordant, 312154 orphans, 6964 too large [>5000 bp], 3381431 duplicates)
Reads: 46500911 total, 91875 skipped (flags/unmapped)
Fragments: 23535917 total (22509380 tlen-paired, 6403 hash-paired, 1655 singletons, 200158 discordant, 818321 orphans, 78589 too large [>5000 bp], 3465501 duplicates)