Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_KY7-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_KY7-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_KY7-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_KY7-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76729474 total, 70309 skipped (flags/unmapped)
Fragments: 38604837 total (38022200 tlen-paired, 6778 hash-paired, 2472 singletons, 5776 discordant, 567611 orphans, 9787 too large [>5000 bp], 7469889 duplicates)
Reads: 70127749 total, 78497 skipped (flags/unmapped)
Fragments: 35271245 total (34748859 tlen-paired, 7597 hash-paired, 2268 singletons, 8165 discordant, 504356 orphans, 6693 too large [>5000 bp], 6818943 duplicates)
Reads: 77226712 total, 72434 skipped (flags/unmapped)
Fragments: 38851666 total (38257223 tlen-paired, 10384 hash-paired, 2463 singletons, 7905 discordant, 573691 orphans, 13550 too large [>5000 bp], 7463397 duplicates)
Reads: 80122213 total, 170304 skipped (flags/unmapped)
Fragments: 40590917 total (38689812 tlen-paired, 8121 hash-paired, 2795 singletons, 374205 discordant, 1515984 orphans, 144427 too large [>5000 bp], 7667707 duplicates)