Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70199808 total, 84592 skipped (flags/unmapped)
Fragments: 35245945 total (34827631 tlen-paired, 16749 hash-paired, 2255 singletons, 9245 discordant, 390065 orphans, 7823 too large [>5000 bp], 7505932 duplicates)
Reads: 70925884 total, 72337 skipped (flags/unmapped)
Fragments: 35620555 total (35177876 tlen-paired, 16504 hash-paired, 2273 singletons, 7968 discordant, 415934 orphans, 15322 too large [>5000 bp], 7576006 duplicates)
Reads: 78977432 total, 171778 skipped (flags/unmapped)
Fragments: 39845741 total (38460389 tlen-paired, 17549 hash-paired, 2768 singletons, 268785 discordant, 1096250 orphans, 106595 too large [>5000 bp], 8453689 duplicates)
Reads: 77966035 total, 72619 skipped (flags/unmapped)
Fragments: 39157179 total (38694226 tlen-paired, 17257 hash-paired, 2531 singletons, 6578 discordant, 436587 orphans, 9088 too large [>5000 bp], 8378180 duplicates)