Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_CBK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_CBK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_CBK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_CBK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 103191441 total, 105882 skipped (flags/unmapped)
Fragments: 51843827 total (51186507 tlen-paired, 16025 hash-paired, 3481 singletons, 11916 discordant, 625898 orphans, 13642 too large [>5000 bp], 13154401 duplicates)
Reads: 112254416 total, 90218 skipped (flags/unmapped)
Fragments: 56417736 total (55693573 tlen-paired, 16454 hash-paired, 3712 singletons, 8809 discordant, 695188 orphans, 13813 too large [>5000 bp], 14302418 duplicates)
Reads: 112714113 total, 89025 skipped (flags/unmapped)
Fragments: 56648753 total (55906854 tlen-paired, 15835 hash-paired, 3806 singletons, 12114 discordant, 710144 orphans, 20766 too large [>5000 bp], 14287264 duplicates)
Reads: 116176140 total, 228552 skipped (flags/unmapped)
Fragments: 58713288 total (56419234 tlen-paired, 16219 hash-paired, 3930 singletons, 440775 discordant, 1833130 orphans, 179036 too large [>5000 bp], 14640687 duplicates)