Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_cd9-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.baiThe index file is older than the data file: 659_cd9-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_cd9-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_cd9-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 103735264 total, 116810 skipped (flags/unmapped)
Fragments: 52229393 total (51346970 tlen-paired, 9245 hash-paired, 3915 singletons, 12058 discordant, 857205 orphans, 10394 too large [>5000 bp], 11284521 duplicates)
Reads: 113858255 total, 96643 skipped (flags/unmapped)
Fragments: 57357688 total (56363950 tlen-paired, 8935 hash-paired, 4260 singletons, 8589 discordant, 971954 orphans, 11225 too large [>5000 bp], 12482408 duplicates)
Reads: 114266497 total, 98909 skipped (flags/unmapped)
Fragments: 57554798 total (56560644 tlen-paired, 8600 hash-paired, 4161 singletons, 11344 discordant, 970049 orphans, 16101 too large [>5000 bp], 12428478 duplicates)
Reads: 118695038 total, 245640 skipped (flags/unmapped)
Fragments: 60284824 total (57010346 tlen-paired, 10163 hash-paired, 4387 singletons, 644711 discordant, 2615217 orphans, 249677 too large [>5000 bp], 12755098 duplicates)