Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_btj-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.baiThe index file is older than the data file: 659_btj-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_btj-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_btj-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88866231 total, 81152 skipped (flags/unmapped)
Fragments: 44648087 total (44088898 tlen-paired, 17515 hash-paired, 3019 singletons, 9235 discordant, 529420 orphans, 10672 too large [>5000 bp], 9901449 duplicates)
Reads: 88321874 total, 101796 skipped (flags/unmapped)
Fragments: 44359245 total (43810667 tlen-paired, 16268 hash-paired, 3097 singletons, 11576 discordant, 517637 orphans, 11161 too large [>5000 bp], 9873157 duplicates)
Reads: 97239933 total, 81616 skipped (flags/unmapped)
Fragments: 48859113 total (48256729 tlen-paired, 15974 hash-paired, 3313 singletons, 8199 discordant, 574898 orphans, 9151 too large [>5000 bp], 10840824 duplicates)
Reads: 99820985 total, 208287 skipped (flags/unmapped)
Fragments: 50391804 total (48549300 tlen-paired, 17075 hash-paired, 3462 singletons, 361977 discordant, 1459990 orphans, 146271 too large [>5000 bp], 11069975 duplicates)