Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_M9M-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.baiThe index file is older than the data file: 869_M9M-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_M9M-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_M9M-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66442678 total, 69096 skipped (flags/unmapped)
Fragments: 33372355 total (32970139 tlen-paired, 9271 hash-paired, 2196 singletons, 7805 discordant, 382944 orphans, 7006 too large [>5000 bp], 6356549 duplicates)
Reads: 66669445 total, 56117 skipped (flags/unmapped)
Fragments: 33497156 total (33084015 tlen-paired, 8424 hash-paired, 2261 singletons, 6387 discordant, 396069 orphans, 8673 too large [>5000 bp], 6341934 duplicates)
Reads: 72801764 total, 57469 skipped (flags/unmapped)
Fragments: 36579986 total (36137112 tlen-paired, 8610 hash-paired, 2450 singletons, 5421 discordant, 426393 orphans, 6583 too large [>5000 bp], 6918641 duplicates)
Reads: 74717881 total, 142841 skipped (flags/unmapped)
Fragments: 37725389 total (36354417 tlen-paired, 10219 hash-paired, 2524 singletons, 269251 discordant, 1088978 orphans, 107882 too large [>5000 bp], 7045710 duplicates)