Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_IT3-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_IT3-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_IT3-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_IT3-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 105503898 total, 97915 skipped (flags/unmapped)
Fragments: 52982472 total (52375002 tlen-paired, 17204 hash-paired, 3117 singletons, 10807 discordant, 576342 orphans, 10249 too large [>5000 bp], 12616638 duplicates)
Reads: 105637121 total, 86784 skipped (flags/unmapped)
Fragments: 53063242 total (52424645 tlen-paired, 18056 hash-paired, 3132 singletons, 9436 discordant, 607973 orphans, 17479 too large [>5000 bp], 12562754 duplicates)
Reads: 115797142 total, 86011 skipped (flags/unmapped)
Fragments: 58165439 total (57493451 tlen-paired, 17911 hash-paired, 3400 singletons, 7680 discordant, 642997 orphans, 13325 too large [>5000 bp], 13784922 duplicates)
Reads: 117745975 total, 210679 skipped (flags/unmapped)
Fragments: 59429752 total (57353151 tlen-paired, 19250 hash-paired, 3675 singletons, 402087 discordant, 1651589 orphans, 165528 too large [>5000 bp], 13953831 duplicates)