Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_P9Y-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.baiThe index file is older than the data file: 869_P9Y-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_P9Y-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_P9Y-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 104565625 total, 106883 skipped (flags/unmapped)
Fragments: 52580620 total (51831511 tlen-paired, 10199 hash-paired, 3336 singletons, 11782 discordant, 723792 orphans, 12315 too large [>5000 bp], 12318558 duplicates)
Reads: 104834965 total, 89681 skipped (flags/unmapped)
Fragments: 52740841 total (51948247 tlen-paired, 13487 hash-paired, 3368 singletons, 9821 discordant, 765918 orphans, 16444 too large [>5000 bp], 12273748 duplicates)
Reads: 114989807 total, 89848 skipped (flags/unmapped)
Fragments: 57850182 total (57004745 tlen-paired, 12273 hash-paired, 3629 singletons, 8591 discordant, 820944 orphans, 12084 too large [>5000 bp], 13507605 duplicates)
Reads: 118924046 total, 231101 skipped (flags/unmapped)
Fragments: 60197081 total (57521321 tlen-paired, 13848 hash-paired, 3857 singletons, 534561 discordant, 2123494 orphans, 213067 too large [>5000 bp], 13818088 duplicates)