Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VQK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VQK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VQK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VQK-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67070963 total, 64676 skipped (flags/unmapped)
Fragments: 33787484 total (33194978 tlen-paired, 5426 hash-paired, 2410 singletons, 7531 discordant, 577139 orphans, 5434 too large [>5000 bp], 6770019 duplicates)
Reads: 67483160 total, 60518 skipped (flags/unmapped)
Fragments: 34002057 total (33374916 tlen-paired, 7438 hash-paired, 2283 singletons, 6519 discordant, 610901 orphans, 15856 too large [>5000 bp], 6770276 duplicates)
Reads: 74978574 total, 58142 skipped (flags/unmapped)
Fragments: 37787947 total (37103706 tlen-paired, 5182 hash-paired, 2655 singletons, 5521 discordant, 670883 orphans, 9038 too large [>5000 bp], 7527078 duplicates)
Reads: 76958727 total, 144198 skipped (flags/unmapped)
Fragments: 39108190 total (36920252 tlen-paired, 6619 hash-paired, 2801 singletons, 438548 discordant, 1739970 orphans, 170460 too large [>5000 bp], 7623473 duplicates)