Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_GCN-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_GCN-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_GCN-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_GCN-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72646218 total, 80082 skipped (flags/unmapped)
Fragments: 36488262 total (36043928 tlen-paired, 11847 hash-paired, 2646 singletons, 8063 discordant, 421778 orphans, 7018 too large [>5000 bp], 7145245 duplicates)
Reads: 79858513 total, 68404 skipped (flags/unmapped)
Fragments: 40121643 total (39628355 tlen-paired, 13143 hash-paired, 2878 singletons, 5864 discordant, 471403 orphans, 10552 too large [>5000 bp], 7840029 duplicates)
Reads: 80105883 total, 71316 skipped (flags/unmapped)
Fragments: 40245895 total (39732267 tlen-paired, 13424 hash-paired, 2841 singletons, 8407 discordant, 488956 orphans, 17287 too large [>5000 bp], 7830577 duplicates)
Reads: 82491933 total, 161077 skipped (flags/unmapped)
Fragments: 41667058 total (40108145 tlen-paired, 13730 hash-paired, 3057 singletons, 302045 discordant, 1240081 orphans, 119939 too large [>5000 bp], 8010059 duplicates)