Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_X4A-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_X4A-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_X4A-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_X4A-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74677427 total, 80197 skipped (flags/unmapped)
Fragments: 37604867 total (36957828 tlen-paired, 6899 hash-paired, 2501 singletons, 7744 discordant, 629895 orphans, 9946 too large [>5000 bp], 7811790 duplicates)
Reads: 81337772 total, 63415 skipped (flags/unmapped)
Fragments: 40989456 total (40256393 tlen-paired, 6359 hash-paired, 2795 singletons, 5485 discordant, 718424 orphans, 8332 too large [>5000 bp], 8470957 duplicates)
Reads: 82252241 total, 65208 skipped (flags/unmapped)
Fragments: 41444869 total (40699849 tlen-paired, 7885 hash-paired, 2725 singletons, 7882 discordant, 726528 orphans, 13274 too large [>5000 bp], 8539368 duplicates)
Reads: 85425779 total, 166828 skipped (flags/unmapped)
Fragments: 43417916 total (40981847 tlen-paired, 7801 hash-paired, 3071 singletons, 478801 discordant, 1946396 orphans, 186293 too large [>5000 bp], 8772186 duplicates)