Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_GCV-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_GCV-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_GCV-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_GCV-N1-BDNA-1_B23H3Y2LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57200254 total, 62211 skipped (flags/unmapped)
Fragments: 28777940 total (28333303 tlen-paired, 6755 hash-paired, 2081 singletons, 6579 discordant, 429222 orphans, 6733 too large [>5000 bp], 4919471 duplicates)
Reads: 57287121 total, 51778 skipped (flags/unmapped)
Fragments: 28832654 total (28367849 tlen-paired, 6210 hash-paired, 1990 singletons, 5560 discordant, 451045 orphans, 11535 too large [>5000 bp], 4900986 duplicates)
Reads: 63312730 total, 53318 skipped (flags/unmapped)
Fragments: 31870108 total (31364015 tlen-paired, 6439 hash-paired, 2290 singletons, 4880 discordant, 492484 orphans, 6985 too large [>5000 bp], 5419587 duplicates)
Reads: 64857266 total, 131019 skipped (flags/unmapped)
Fragments: 32875435 total (31277528 tlen-paired, 7221 hash-paired, 2431 singletons, 317431 discordant, 1270824 orphans, 124316 too large [>5000 bp], 5490801 duplicates)