Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_B6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_B6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_B6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_B6-N1-BDNA-1_B23KFG5LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83719416 total, 50064 skipped (flags/unmapped)
Fragments: 41987454 total (41644681 tlen-paired, 2704 hash-paired, 449 singletons, 11999 discordant, 327621 orphans, 11257 too large [>5000 bp], 17406528 duplicates)
Reads: 84610516 total, 53157 skipped (flags/unmapped)
Fragments: 42436304 total (42065224 tlen-paired, 3026 hash-paired, 326 singletons, 14623 discordant, 353105 orphans, 19091 too large [>5000 bp], 18063883 duplicates)
Reads: 78064240 total, 60778 skipped (flags/unmapped)
Fragments: 39145910 total (38812100 tlen-paired, 3299 hash-paired, 378 singletons, 16921 discordant, 313212 orphans, 12616 too large [>5000 bp], 16571329 duplicates)
Reads: 93480256 total, 85275 skipped (flags/unmapped)
Fragments: 46993925 total (46072251 tlen-paired, 2574 hash-paired, 393 singletons, 180947 discordant, 737760 orphans, 72642 too large [>5000 bp], 20023730 duplicates)